Search results for " Microbial community"

Evidence for shifts in the structure and abundance of the microbial community in a long-term PCB-contaminated soil under bioremediation.

2011

International audience; Although the impact of bioremediation of PCB-contaminated sites on the indigenous microbial community is a key question for soil restoration, it remains poorly understood. Therefore, a small-scale bioremediation assay made of (a) a biostimulation treatment with carvone, soya lecithin and xylose and (b) two bioaugmentation treatments, one with a TSZ7 mixed culture and another with a Rhodococcus sp. Z6 pure strain was set up. Changes in the structure of the global soil microbial community and in the abundances of different taxonomic phyla were monitored using ribosomal intergenic spacer analysis (RISA) and real-time PCR. After an 18-month treatment, the structure of th…

Bacterial community structure along the subtidal sandy sediment belt of a high Arctic fjord (Kongsfjorden, Svalbard Islands)

2018

Open fjords are subject to contrasting environmental conditions, owing to meltwater glacial inputs, terrestrial runoff, and marine water mass exchanges, which are exacerbated by anthropogenic and climate perturbations. Following a slope-dependent water circulation, the subtidal sandy sediment belt regulates the convergent transport of nutrients downward the fjord depths, and the effective entrapment of suspended particles and microorganisms. In this study, we aimed at testing how glacial and seawater inputs may influence the bacterial community structure of subtidal sand deposits in the Kongsfjorden. Through total and viable cell counting and an amplicon sequencing approach, we found releva…

Effects of precipitation regime on soil bacterial and fungal activity upon rewetting of a plant-soil system using 18O-SIP: depth matters

2017

EASPEBIOmEDOCT INRA; Climate change is predicted to affect not only the amount but also the temporal distribution of rain. Changes in frequency and amplitude of rain events, likely shape the activity of plants and soil microbes. Fluctuating water conditions will differ with soil depth between precipitation patterns, affecting plant growth and may result in differential microbial response upon rewetting. Our objective was to investigate, in plant-soil systems, the response of the metabolically active microbial communities to a rewetting event and to which extent this was modulated by 1) soil depth and 2) precipitation legacy. Wheat planted in soil mesocosms were subjected to frequent or infr…

Comparison of different tillage systems in organic farming : effect of soil structure and organic matter repartition on soil micro-organisms and thei…

2009

Over the last decades, the surface traditionally ploughed has tended to decrease and replaced by shallow working tillage techniques without soil inversion, i.e., no tillage or reduced tillage with tines or discs. These techniques were mostly developed in conventional farming systems but nowadays they are also developed in organic farming systems. Nevertheless, these tillage techniques could generate crop nutrients deficiencies and a deterioration of soil structure, especially during the first years of their application. As the use of synthetic fertilizers is forbidden in organic farming, a decrease of the soil fertility could be very detrimental for crop growth. Indeed, soil micro-organisms…

Plant-soil interactions in cold climate

2013

A Noxious Weed Ambrosia artemisiifolia L. (Ragweed) as Sustainable Feedstock for Methane Production and Metals Immobilization

2023

Plants of the Ambrosia genus are invasive and cause many ecological problems, including the oppression of the growth of agricultural crops and native plants, land depletion, and the production of strong allergens. The use of weeds as a sustainable feedstock for biogas production, either methane or hydrogen, is a promising way to fulfill the energy needs of the current generation, eliminate the depletion of non-renewable carbon resources, and preserve the ecosystem degradation caused by invasive species impacts. A diversified microbial community was used as inoculum and Ambrosia artemisiifolia L. biomass as a substrate for anaerobic degradation and methane production. In this regard, the dev…

Preliminary insights about the treatment of contaminated marine sediments by means of bioslurry reactor: Process evaluation and microbiological chara…

2022

Abstract Contaminated marine sediments represent a critical threat towards human health and ecosystems, since they constitute a potential reservoir of toxic compounds release. In the present study, a bioslurry reactor was studied for the treatment of real marine sediments contaminated by petroleum hydrocarbons. The experimental campaign was divided in two periods: in the first period, microcosm trials were carried out to achieve useful indicators for biological hydrocarbon removal from sediments. The microcosm trials highlighted that the inoculum of halotolerant allochthonous bacteria provided the highest performance followed by autochthonous biomass. Based on the achieved results, in the s…

"Role of Arbuscular Mycorrhizal Fungi in Nutrient Uptake and Growth of Durum Wheat"

Soil microbiome is involved at different levels in the food web, in bio-geochemical nutrient cycles and in several interactions with plants. Based on its key role in the agro-ecosystem processes, the soil microbiome has been identified as one of the principal factors in an agriculture addressed to the ecological intensification. Among the several relationships established between plants and soil microorganisms, arbuscular mycorrhizal (AM) symbiosis is the most widespread. Two out of three of all plant taxa (among others the main crops) are involved in the AM symbiosis which takes place between the plant root system and arbuscular mycorrhizal fungi (AMF), a monophyletic group of fungi belong…

Meiofauna and benthic microbial biomass in a semi-enclosed mediterranean marine system (Stagnone di Marsala, Italy)

2004

Microbial and meiofaunal dynamics and their relationships with the biochemical composition of the sedimentary organic matter were investigated in a semi-enclosed marine system (Marsala lagoon, Western Sicily, Mediterranean Sea). Sediment samples were collected on a monthly basis from March 1996 to February 1997 in four stations located along a N–S transect characterized by different hydrodynamic regimes. Total sedimentary organic matter concentration ranged from 5.681.11 to 156.2812.63 mg g1, while the biopolymeric fraction of organic carbon (BPC, measured as sum of the lipids, carbohydrates and proteins) accounted for only a small fraction (24%) of total organic matter. Total meiofaunal de…

Ecological role of mycotoxins produced by Fusarium graminearum : consequences of the presence of deoxynivalenol (DON) in crop residues on the soil mi…

2012

Fusarium graminearum is a plant pathogenic fungus, causing devastating disease “Fusarium head blight” (FHB) in cereals including wheat and maize. It also contaminates the grains with mycotoxins including deoxynivalenol (DON) which are toxic to human and animals. This disease has resulted in the serious losses in grain yield and quality. We established through a first bibliographic review that during off season fungus survives saprophytically on the crop residues (ecological habitat) and serves as primary inoculum for the next season crop. However, we noticed also that the literature was poor about the role mycotoxins could play in the establishment of F. graminearum in such a habitat. The m…